Deciphering lignocellulose deconstruction by the white rot fungus Irpex lacteus based on genomic and transcriptomic analyses.
Identifieur interne : 000456 ( Main/Exploration ); précédent : 000455; suivant : 000457Deciphering lignocellulose deconstruction by the white rot fungus Irpex lacteus based on genomic and transcriptomic analyses.
Auteurs : Xing Qin [République populaire de Chine] ; Xiaoyun Su [République populaire de Chine] ; Huiying Luo [République populaire de Chine] ; Rui Ma [République populaire de Chine] ; Bin Yao [République populaire de Chine] ; Fuying Ma [République populaire de Chine]Source :
- Biotechnology for biofuels [ 1754-6834 ] ; 2018.
Abstract
Background
Results
Conclusions
The selective strategy employed by
DOI: 10.1186/s13068-018-1060-9
PubMed: 29507610
PubMed Central: PMC5833081
Affiliations:
Links toward previous steps (curation, corpus...)
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sortKey="Qin, Xing" sort="Qin, Xing" uniqKey="Qin X" first="Xing" last="Qin">Xing Qin</name><affiliation wicri:level="3"><nlm:affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>2College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan</wicri:regionArea><placeName><settlement type="city">Wuhan</settlement><region type="région">Hubei</region></placeName></affiliation></author><author><name sortKey="Su, Xiaoyun" sort="Su, Xiaoyun" uniqKey="Su X" first="Xiaoyun" last="Su">Xiaoyun Su</name><affiliation wicri:level="3"><nlm:affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Luo, Huiying" sort="Luo, Huiying" uniqKey="Luo H" first="Huiying" last="Luo">Huiying Luo</name><affiliation wicri:level="3"><nlm:affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Ma, Rui" sort="Ma, Rui" uniqKey="Ma R" first="Rui" last="Ma">Rui Ma</name><affiliation wicri:level="3"><nlm:affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Yao, Bin" sort="Yao, Bin" uniqKey="Yao B" first="Bin" last="Yao">Bin Yao</name><affiliation wicri:level="3"><nlm:affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Ma, Fuying" sort="Ma, Fuying" uniqKey="Ma F" first="Fuying" last="Ma">Fuying Ma</name><affiliation wicri:level="3"><nlm:affiliation>2College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan</wicri:regionArea><placeName><settlement type="city">Wuhan</settlement><region type="région">Hubei</region></placeName></affiliation></author></analytic><series><title level="j">Biotechnology for biofuels</title><idno type="ISSN">1754-6834</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>Background</b></p><p></p></div><div type="abstract" xml:lang="en"><p><b>Results</b></p><p></p></div><div type="abstract" xml:lang="en"><p><b>Conclusions</b></p><p>The selective strategy employed by </p></div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">29507610</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1754-6834</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2018</Year></PubDate></JournalIssue><Title>Biotechnology for biofuels</Title><ISOAbbreviation>Biotechnol Biofuels</ISOAbbreviation></Journal><ArticleTitle>Deciphering lignocellulose deconstruction by the white rot fungus <i>Irpex lacteus</i> based on genomic and transcriptomic analyses.</ArticleTitle><Pagination><MedlinePgn>58</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s13068-018-1060-9</ELocationID><Abstract><AbstractText Label="Background" NlmCategory="UNASSIGNED"><i>Irpex lacteus</i> is one of the most potent white rot fungi for biological pretreatment of lignocellulose for second biofuel production. To elucidate the underlying molecular mechanism involved in lignocellulose deconstruction, genomic and transcriptomic analyses were carried out for <i>I. lacteus</i> CD2 grown in submerged fermentation using ball-milled corn stover as the carbon source.</AbstractText><AbstractText Label="Results" NlmCategory="UNASSIGNED"><i>Irpex lacteus</i> CD2 efficiently decomposed 74.9% lignin, 86.3% cellulose, and 83.5% hemicellulose in corn stover within 9 days. Manganese peroxidases were rapidly induced, followed by accumulation of cellulase and hemicellulase. Genomic analysis revealed that <i>I. lacteus</i> CD2 possessed a complete set of lignocellulose-degrading enzyme system composed mainly of class II peroxidases, dye-decolorizing peroxidases, auxiliary enzymes, and 182 glycoside hydrolases. Comparative transcriptomic analysis substantiated the notion of a selection mode of degradation. These analyses also suggested that free radicals, derived either from MnP-organic acid interplay or from Fenton reaction involving Fe<sup>2+</sup> and H<sub>2</sub>O<sub>2</sub>, could play an important role in lignocellulose degradation.</AbstractText><AbstractText Label="Conclusions" NlmCategory="UNASSIGNED">The selective strategy employed by <i>I. lacteus</i> CD2, in combination with low extracellular glycosidases cleaving plant cell wall polysaccharides into fermentable sugars, may account for high pretreatment efficiency of <i>I. lacteus</i>. Our study also hints the importance of free radicals for future designing of novel, robust lignocellulose-degrading enzyme cocktails.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y" EqualContrib="Y"><LastName>Qin</LastName><ForeName>Xing</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>2College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 7223</Identifier><Identifier Source="GRID">grid.33199.31</Identifier></AffiliationInfo></Author><Author ValidYN="Y" EqualContrib="Y"><LastName>Su</LastName><ForeName>Xiaoyun</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luo</LastName><ForeName>Huiying</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ma</LastName><ForeName>Rui</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yao</LastName><ForeName>Bin</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>1Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ma</LastName><ForeName>Fuying</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>2College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 7223</Identifier><Identifier Source="GRID">grid.33199.31</Identifier></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>03</Month><Day>02</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Biotechnol Biofuels</MedlineTA><NlmUniqueID>101316935</NlmUniqueID><ISSNLinking>1754-6834</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Free radicals</Keyword><Keyword MajorTopicYN="N">Irpex lacteus</Keyword><Keyword MajorTopicYN="N">Lignocellulose</Keyword><Keyword MajorTopicYN="N">Manganese peroxidase</Keyword><Keyword MajorTopicYN="N">Transcriptomics</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>11</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>02</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>3</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>3</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>3</Month><Day>7</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29507610</ArticleId><ArticleId IdType="doi">10.1186/s13068-018-1060-9</ArticleId><ArticleId 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first="Fuying" last="Ma">Fuying Ma</name><name sortKey="Ma, Rui" sort="Ma, Rui" uniqKey="Ma R" first="Rui" last="Ma">Rui Ma</name><name sortKey="Qin, Xing" sort="Qin, Xing" uniqKey="Qin X" first="Xing" last="Qin">Xing Qin</name><name sortKey="Su, Xiaoyun" sort="Su, Xiaoyun" uniqKey="Su X" first="Xiaoyun" last="Su">Xiaoyun Su</name><name sortKey="Yao, Bin" sort="Yao, Bin" uniqKey="Yao B" first="Bin" last="Yao">Bin Yao</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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